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medsci-skills

автор Aperivue · Aperivue/medsci-skills

23 Claude Code skills built by a physician for the full medical research pipeline — literature search, protocol, stats, figures, IMRAD manuscript, reviewer response.

MedSci Skills covers the end-to-end clinical research workflow: literature search with verified citations, sample-size calculation, de-identification, stats code in Python/R for 13+ designs, PRISMA/STROBE/STARD compliance, publication figures, full IMRAD manuscripts, reviewer-response frameworks, and journal recommendation. Built with anti-hallucination citation discipline.

Зачем использовать

Ключевые функции

Живое демо

Как выглядит на практике

medsci-skill.replay ▶ готово
0/0

Установка

Репозиторий автора · Официальная документация Claude Skills

Сценарии использования

Реальные сценарии: medsci-skills

Draft a STROBE-compliant observational study manuscript

👤 Clinical researchers with a cleaned dataset and ready to write ⏱ ~120 min advanced

Когда использовать: You have analyses done and need to turn them into a submittable IMRAD manuscript.

Поток
  1. Draft methods and results from outputs
    Use medsci-skills. Here are my analysis outputs and study design (retrospective cohort). Draft the Methods and Results sections, STROBE-compliant.✓ Скопировано
    → Full drafts with STROBE item mapping
  2. Run compliance audit
    Now audit this manuscript against the STROBE checklist — flag every missing item.✓ Скопировано
    → Table: item / present? / note
  3. Self-review from reviewer perspective
    Now critique this manuscript as a reviewer at the target journal would. Be harsh.✓ Скопировано
    → Numbered critique with line-level references

Итог: A manuscript that clears a reporting-guideline audit and has been stress-tested before submission.

Подводные камни
  • Citations that look right but don't exist — The skill enforces verification — never accept a citation you can't open in PubMed
Сочетать с: arxiv · biomcp

Run a PRISMA-compliant systematic review pipeline

👤 Researchers starting a systematic review / meta-analysis ⏱ ~240 min advanced

Когда использовать: You're beginning a PRISMA-guided review.

Поток
  1. Build search strategy and fetch
    Use medsci-skills to design a PRISMA search for '<topic>'. Run it against PubMed and Europe PMC.✓ Скопировано
    → Boolean strategy + hit counts per database
  2. Screen and extract
    For the included studies, extract into the meta-analysis pipeline format.✓ Скопировано
    → Structured extraction table
  3. Generate PRISMA flow diagram and forest plot
    Now generate the PRISMA diagram and forest plot figures at journal resolution.✓ Скопировано
    → PDF/PNG figures ready to paste

Итог: A compliant SR manuscript scaffold with figures.

Подводные камни
  • Over-inclusive search returns 10k+ hits — Tighten terms with the skill's query-refinement helper
Сочетать с: arxiv

Calculate sample size with an IRB-ready justification paragraph

👤 PIs preparing an ethics submission ⏱ ~15 min intermediate

Когда использовать: Before IRB review, when you need the stats justification done right.

Поток
  1. Specify effect size, alpha, power
    Use medsci-skills sample-size. Design: two-arm RCT. Primary outcome: continuous, expected difference 0.3 SD, alpha 0.05, power 0.8, 1:1 allocation.✓ Скопировано
    → N per arm + the formula + an IRB-ready paragraph

Итог: A justification block you can paste into the protocol.

Draft point-by-point responses to reviewer comments

👤 Authors preparing a revision ⏱ ~45 min intermediate

Когда использовать: You got R1 reviews back and need a disciplined response.

Поток
  1. Structure the response letter
    Here are the reviewer comments. Use medsci-skills to draft a point-by-point response — quote comment, response, revised manuscript location.✓ Скопировано
    → Structured table-like response with line refs

Итог: A cover letter editors will thank you for.

Подводные камни
  • Agreeing with every comment and weakening the paper — Ask the skill to push back on comments you disagree with, with evidence

Комбинации

Сочетайте с другими MCP — эффект x10

medsci-skill + arxiv + biomcp

Pull primary literature with verifiable IDs for citations

Use biomcp + medsci-skills literature-search to find RCTs on <topic> from 2020–2025.✓ Скопировано
medsci-skill + filesystem

Keep protocol / manuscript / figures / stats in one versioned folder

Create project structure per medsci-skills conventions and initialize git.✓ Скопировано

Инструменты

Что предоставляет этот MCP

ИнструментВходные данныеКогда вызыватьСтоимость
literature-search topic, databases Start of any research task 0
sample-size design, effect size, alpha, power Protocol writing 0
deidentify clinical dataset Before any data work 0
stats-code design, data structure Analysis phase 0
manuscript-imrad outputs, design Writing phase 0
compliance-audit manuscript, guideline (STROBE/PRISMA/…) Pre-submission 0
journal-recommender manuscript Picking where to submit 0
reviewer-response reviews, manuscript Revision phase 0

Стоимость и лимиты

Во что обходится

Квота API
None from the skill itself
Токенов на вызов
Large — manuscript drafts run 10–30k tokens
Деньги
Free, OSS
Совет
Draft with a smaller model, polish with Opus — the 2-pass approach halves spend

Безопасность

Права, секреты, радиус поражения

Хранение учётных данных: No credentials stored; any DB API keys (PubMed, etc.) read from env
Исходящий трафик: Only to databases you configure — PubMed, arXiv, etc. Never send PHI to external LLMs without de-identification.

Устранение неполадок

Частые ошибки и исправления

literature-search returns no results

Broaden terms; the skill defaults to strict Boolean

Compliance audit flags many items as missing

That's expected on a first draft — work through them in order of severity

Альтернативы

medsci-skills в сравнении

АльтернативаКогда использоватьКомпромисс
biomcpYou mainly need biomedical data retrieval without the manuscript layerLess writing support
arxivPre-prints onlyNo medical guideline compliance

Ещё

Ресурсы

📖 Читать официальный README на GitHub

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